DDD (3.4)

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Diversity-Dependent Diversification.

http://cran.r-project.org/web/packages/DDD

Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, , Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, and Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, . Also contains functions to simulate the diversity-dependent process.

Maintainer: Rampal S. Etienne
Author(s): Rampal S. Etienne & Bart Haegeman

License: GPL-3

Uses: ade4, ape, deSolve, expoRkit, Matrix, phytools, SparseM, subplex
Reverse suggests: nLTT

Released about 1 month ago.


6 previous versions

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Related packages: PHYLOGR, apTreeshape, geiger, ggplot2, ouch, paleoTS, rmetasim, vegan, ape, phangorn, picante, MCMCglmm, metafor, pegas, phylobase, adephylo, phyloclim, BoSSA, phyclust, TreeSim(20 best matches, based on common tags.)


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