HTSSIP (1.0.3)

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High Throughput Sequencing of Stable Isotope Probing Data Analysis.

http://cran.r-project.org/web/packages/HTSSIP

Perform HTS-SIP analyses such as high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP). More information on HR-SIP, MW-HR-SIP, and q-SIP can be found in: 1) Pepe-Ranney, Charles, Ashley N. Campbell, Chantal N. Koechli, Sean Berthrong, and Daniel H. Buckley. 2016. "Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil." Terrestrial Microbiology, 703. 2) Youngblut, Nicholas D., and Daniel H. Buckley. "Evaluating the Accuracy of DNA Stable Isotope Probing". in prep. 3) Hungate, Bruce A., Rebecca L. Mau, Egbert Schwartz, J. Gregory Caporaso, Paul Dijkstra, Natasja van Gestel, Benjamin J. Koch, et al. 2015. "Quantitative Microbial Ecology Through Stable Isotope Probing." Applied and Environmental Microbiology, August, AEM.02280-15.

Maintainer: Nicholas Youngblut
Author(s): Nicholas Youngblut [aut, cre], Samuel Barnett [ctb]

License: GPL-2 | file LICENSE

Uses: coenocliner, dplyr, ggplot2, magrittr, plyr, stringr, tidyr, testthat, doParallel, knitr, rmarkdown

Released 5 months ago.


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