MonoPhy (1.2)

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Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny.

http://cran.r-project.org/web/packages/MonoPhy

Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.

Maintainer: Orlando Schwery
Author(s): Orlando Schwery

License: GPL-3

Uses: ape, phangorn, phytools, RColorBrewer, taxize, testthat, spacodiR, knitr, rmarkdown

Released 12 months ago.


2 previous versions

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