PhylogeneticEM (1.0.1)

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Automatic Shift Detection using a Phylogenetic EM.

https://github.com/pbastide/PhylogeneticEM
http://cran.r-project.org/web/packages/PhylogeneticEM

Implementation of the automatic shift detection method for Brownian Motion (BM) or OrnsteinUhlenbeck (OU) models of trait evolution on phylogenies. Some tools to handle equivalent shifts configurations are also available.

Maintainer: Paul Bastide
Author(s): Paul Bastide [aut, cre], Mahendra Mariadassou [ctb]

License: GPL (>= 2) | file LICENSE

Uses: ape, capushe, foreach, gglasso, glmnet, LINselect, MASS, Matrix, plyr, Rcpp, robustbase, combinat, testthat, TreeSim, phytools, doParallel, knitr, rmarkdown, Rphylopars

Released 22 days ago.


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