biomartr (0.4.0)

0 users

Genomic Data Retrieval.

https://github.com/HajkD/biomartr
http://cran.r-project.org/web/packages/biomartr

Perform metagenomic data retrieval and functional annotation retrieval. In detail, this package aims to provide users with a standardized way to automate genome, proteome, coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI' and 'ENSEMBL' databases. Furthermore, an interface to the 'BioMart' database (Smedley et al. (2009) ) allows users to retrieve functional annotation for genomic loci. Users can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) ), 'NCBI nr', 'NCBI nt' and 'NCBI Genbank' (Benson et al. (2013) ) as well as 'ENSEMBL' and 'ENSEMBLGENOMES' with only one command.

Maintainer: Hajk-Georg Drost
Author(s): Hajk-Georg Drost

License: GPL-3

Uses: curl, data.table, downloader, dplyr, httr, jsonlite, RCurl, readr, stringi, stringr, tibble, XML, testthat, devtools, knitr, rmarkdown

Released about 1 month ago.


7 previous versions

Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of biomartr yet. Want to be the first? Write one now.


Related packages:(20 best matches, based on common tags.)


Search for biomartr on google, google scholar, r-help, r-devel.

Visit biomartr on R Graphical Manual.