epoc (0.2.4-12)
EPoC (Endogenous Perturbation analysis of Cancer).
http://cran.r-project.org/web/packages/epoc
Estimates sparse matrices A or G using fast lasso regression from mRNA transcript levels Y and CNA profiles U. Two models are provided, EPoC A where AY + U + R = 0 and EPoC G where Y = GU + E, the matrices R and E are so far treated as noise. For details see the reference and the manual page of `lassoshooting'.
Maintainer:
Tobias Abenius
Author(s): Rebecka Jornsten, Tobias Abenius, Sven Nelander
License: LGPL-3
Uses: elasticnet, igraph, irr, lassoshooting, Matrix, survival, graph
Released over 1 year ago.
