fbar (0.1.23)

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An Extensible Approach to Flux Balance Analysis.

http://cran.r-project.org/web/packages/fbar

This is a simple package for Flux Balance Analysis and related metabolic modelling techniques. Functions are provided for: parsing models in tabular format, converting parsed metabolic models to input formats for common linear programming solvers, and evaluating and applying gene-protein-reaction mappings. In addition, there are wrappers to parse a model, select a solver, find the metabolic fluxes, and return the results applied to the original model. Compared to other packages in this field, this package puts a much heavier focus on providing reusable components that can be used in the design of new implementation of new techniques, in particular those that involve large parameter sweeps.

Maintainer: Max Conway
Author(s): Max Conway [aut, cre]

License: GPL-3

Uses: assertthat, dplyr, magrittr, Matrix, purrr, ROI, stringr, tibble, tidyr, Rglpk, testthat, ROI.plugin.glpk, knitr, rmarkdown, ROI.plugin.ecos, tidyverse

Released 4 months ago.


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