gRbase (1.6-8)

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A package for graphical modelling in R.

http://people.math.aau.dk/~sorenh/software/gR/
http://cran.r-project.org/web/packages/gRbase

The gRbase package provides certain general constructs which are used by other graphical modelling packages, in particular by the packages gRain, gRim and gRc. . gRbase contains several datasets relevant for use in connection with graphical models. Almost all datasets used in the book Graphical Models with R (2012) are contained in gRbase. . gRbase implements several graph algorithms (based mainly on representing graphs as adjacency matrices - either in the form of a standard matrix or a sparse matrix). Some graph algorithms are: (i) maximum cardinality search (for marked and unmarked graphs). (ii) moralize. (iii) triangulate. (iv) junctionTree. . gRbase facilities for array operations, . gRbase implements functions for testing for conditional independence. . gRbase illustrates how hierarchical log-linear models (hllm) may be implemented and describes concept of gmData (graphical meta data). These features, however, are not maintained anymore and remains in gRbase only because there exists a paper describing these facilities: A Common Platform for Graphical Models in R: The gRbase Package, Journal of Statistical Software, Vol 14, No 17, 2005.

Maintainer: Søren Højsgaard
Author(s): Søren Højsgaard <sorenh@math.aau.dk> with contributions from Claus Dethlefsen <cld@rn.dk> and Clive Bowsher <C.Bowsher@statslab.cam.ac.uk>

License: GPL (>= 2)

Uses: fastmatch, graph, igraph, MASS, Matrix, Rcpp, RcppArmadillo, RcppEigen
Reverse depends: ggm, gRain, gRc, gRim, mimR, pacose, topologyGSA
Reverse suggests: logilasso

Released 3 months ago.


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Visit gRbase on R Graphical Manual.