haplo.stats (1.6.3)
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous.
http://mayoresearch.mayo.edu/mayo/research/schaid_lab/software.cfm
http://cran.r-project.org/web/packages/haplo.stats
A suite of R routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em, haplo.glm, haplo.score, haplo.power, and seqhap.
Maintainer:
Jason P. Sinnwell
Author(s): Sinnwell JP, Schaid DJ
License: GPL-2 | file LICENSE
Uses: rms
Reverse depends: BVS, GenABEL, haplo.ccs, IFP, mirf, SHARE, SNPassoc, trio
Reverse suggests: gap, GenABEL, trio
Released 5 months ago.
9 previous versions
- haplo.stats_1.6.1. Released 5 months ago.
- haplo.stats_1.5.8. Released 7 months ago.
- haplo.stats_1.5.6. Released 9 months ago.
- haplo.stats_1.5.5. Released over 1 year ago.
- haplo.stats_1.5.2. Released over 1 year ago.
- haplo.stats_1.4.4. Released over 3 years ago.
- haplo.stats_1.4.3.
- haplo.stats_1.3.8. Released over 12 years ago.
- haplo.stats_1.3.1. Released over 12 years ago.
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This package used in a new book
This recent book by Andrea Foulkes makes use of functions in haplo.stats:
http://people.umass.edu/foulkes/asg.html
Check it out!
sinnweja did not rate haplo.stats (1.4.4). Read the full review.
Related packages: Biodem, GenABEL, Geneland, HardyWeinberg, LDheatmap, SNPmaxsel, adegenet, bqtl, catmap, gap, genetics, hapassoc, haplo.ccs, hapsim, hwde, ibdreg, kinship, ldDesign, lodplot, luca … (20 best matches, based on common tags.)
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