haplo.stats (1.7.7)

1 user

Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous.

http://www.mayo.edu/research/labs/statistical-genetics-genetic-epidemiology/software
http://cran.r-project.org/web/packages/haplo.stats

Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.

Maintainer: Jason P. Sinnwell
Author(s): Sinnwell JP, Schaid DJ

License: GPL (>= 2)

Uses: rms, R.rsp
Reverse depends: BVS, GenABEL, haplo.ccs, IFP, mirf, SHARE, SNPassoc, trio
Reverse suggests: asymLD, gap, GenABEL, trio

Released about 1 year ago.


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Related packages: Biodem, GenABEL, Geneland, HardyWeinberg, LDheatmap, SNPmaxsel, adegenet, bqtl, gap, genetics, hapassoc, haplo.ccs, hierfstat, hwde, ibdreg, luca, ouch, pbatR, qtl, rmetasim(20 best matches, based on common tags.)


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