kdetrees (0.1.5)

0 users

Nonparametric method for identifying discordant phylogenetic trees.

http://github.com/grady/kdetrees
http://cran.r-project.org/web/packages/kdetrees

A non-parametric method for identifying potential outlying observations in a collection of phylogenetic trees based on the methods of Owen and Provan (2011). Such discordant trees may indicate problems with sequence annotation or tree reconstruction, or they may represent interesting biological phenomena, such as horizontal gene transfers.

Maintainer: Grady Weyenberg
Author(s): Grady Weyenberg and Ruriko Yoshida

License: GPL-2

Uses: ape, distory, ggplot2

Released almost 3 years ago.


2 previous versions

Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of kdetrees yet. Want to be the first? Write one now.


Related packages: PHYLOGR, apTreeshape, geiger, ggplot2, ouch, paleoTS, rmetasim, vegan, ape, phangorn, MCMCglmm, metafor, pegas, phylobase, adephylo, phyloclim, BoSSA, phyclust, TreeSim, TreePar(20 best matches, based on common tags.)


Search for kdetrees on google, google scholar, r-help, r-devel.

Visit kdetrees on R Graphical Manual.