mrMLM (2.1)

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Multi-Locus Random-SNP-Effect Mixed Linear Model for Genome-Wide Association Studies and Linkage Analyses.

http://cran.r-project.org/web/packages/mrMLM

Conduct multi-locus GWAS and multi-locus QTL mapping under the framework of random-SNP-effect mixed linear model (mrMLM). First, each position (or marker) on the genome is scanned by mrMLM algorithm. Bonferroni correction is replaced by a less stringent selection criterion for significant test. Then, all the markers (or QTL) that are potentially associated with the trait are included in a multi-locus model, their effects are estimated by empirical Bayes and true QTN or QTL are identified by likelihood ratio test.

Maintainer: Yuanming Zhang
Author(s): Wenlong Ren,Yuanli Ni,Shibo Wang,Yangjun Wen,Bo Huang and Yuanming Zhang

License: GPL (>= 2)

Uses: ggplot2, gWidgets, gWidgetsRGtk2, lars, MASS, ncvreg, openxlsx, qqman, RGtk2, RGtk2Extras, stringr

Released 5 months ago.


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