pastis (0.1-2)

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Phylogenetic Assembly with Soft Taxonomic Inferences.

http://cran.r-project.org/web/packages/pastis/
http://cran.r-project.org/web/packages/pastis

A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints as per xxx. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.

Maintainer: Gavin Thomas
Author(s): Klaas Hartmann, Gavin Thomas, Arne Mooers, Jeffrey Joy, Walter Jetz

License: GPL (>= 3)

Uses: ape, caper

Released over 3 years ago.


2 previous versions

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Related packages: PHYLOGR, apTreeshape, geiger, ggplot2, ouch, paleoTS, rmetasim, vegan, ape, phangorn, picante, MCMCglmm, metafor, pegas, phylobase, adephylo, phyloclim, BoSSA, phyclust, TreeSim(20 best matches, based on common tags.)


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Visit pastis on R Graphical Manual.