polyphemus (0.3.4)

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Polyphemus is dedicated to the genome wide analysis of the Polymerase II based ChIP Seq data..

http://www-igbmc.u-strasbg.fr/recherche/Dep_BC/Eq_HGron/index_uk.html
http://cran.r-project.org/web/packages/polyphemus

Polyphemus is able to combine signal intensity (count) profiles, with significant peak annotations in order to identify coding regions of interest for the comparative analysis or two or more samples. The algorithm (i) identifies significant coding regions, (ii) performs normalization and (iii) compare several profiles and (iv) provide matrix output suitable for further clustering analysis.

Maintainer: Martial Sankar
Author(s): Martial Sankar, supervised by Marco Mendoza and Hinrich Gronenmeyer

License: GPL (>= 2)

Uses: multicore, R.utils, RUnit, zoo

Released over 2 years ago.


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