ssizeRNA (1.2.9)

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Sample Size Calculation for RNA-Seq Experimental Design.

http://cran.r-project.org/web/packages/ssizeRNA

We propose a procedure for sample size calculation while controlling false discovery rate for RNA-seq experimental design. Our procedure depends on the Voom method proposed for RNA-seq data analysis by Law et al. (2014) and the sample size calculation method proposed for microarray experiments by Liu and Hwang (2007) . We develop a set of functions that calculates appropriate sample sizes for two-sample t-test for RNA-seq experiments with fixed or varied set of parameters. The outputs also contain a plot of power versus sample size, a table of power at different sample sizes, and a table of critical test values at different sample sizes. To install this package, please use 'source("http://bioconductor.org/biocLite.R"); biocLite("ssizeRNA")'.

Maintainer: Ran Bi
Author(s): Ran Bi [aut, cre], Peng Liu [aut], Tim Triche [ctb]

License: GPL (>= 2)

Uses: MASS, qvalue, ssize.fdr, knitr

Released 6 months ago.


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