surface (0.4-1)

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Fitting Hansen Models to Investigate Convergent Evolution.

http://www.people.fas.harvard.edu/~ingram/web/surface.html
http://cran.r-project.org/web/packages/surface

SURFACE is a data-driven phylogenetic comparative method for fitting stabilizing selection models to continuous trait data, building on the ouch package. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak.

Maintainer: Travis Ingram
Author(s): Travis Ingram

License: GPL (>= 2)

Uses: ape, geiger, MASS, ouch, igraph

Released about 3 years ago.


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Related packages: PHYLOGR, apTreeshape, geiger, ggplot2, ouch, paleoTS, rmetasim, vegan, ape, phangorn, MCMCglmm, metafor, pegas, phylobase, adephylo, phyloclim, BoSSA, phyclust, TreeSim, TreePar(20 best matches, based on common tags.)


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