ADaCGH (1.5-3)

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Analysis of data from aCGH experiments.

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), , ACE method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's modification of Smith & Waterman's algorith. Most computations are parallelized. Figures are imagemaps with links to IDClight (

Maintainer: Ramon Diaz-Uriarte
Author(s): Ramon Diaz-Uriarte <>, Oscar M. Rueda <>. Wavelet-based aCGH smoothing code from Li Hsu <> and Douglas Grove <>. Imagemap code from Barry Rowlingson <>. HaarSeg code from Erez Ben-Yaacov; downloaded from <>

License: GPL (>= 3)

Uses: cgh, cluster, GDD, Hmisc, papply, waveslim, Rmpi, rsprng

Released about 10 years ago.

3 previous versions



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