ADaCGH (1.5-3)

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Analysis of data from aCGH experiments.

http://adacgh2.bioinfo.cnio.es
http://launchpad.net/adacgh
http://cran.r-project.org/web/packages/ADaCGH

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), , ACE method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's modification of Smith & Waterman's algorith. Most computations are parallelized. Figures are imagemaps with links to IDClight (http://idclight.bioinfo.cnio.es).

Maintainer: Ramon Diaz-Uriarte
Author(s): Ramon Diaz-Uriarte <rdiaz02@gamil.com>, Oscar M. Rueda <rueda.om@gamil.com>. Wavelet-based aCGH smoothing code from Li Hsu <lih@fhcrc.org> and Douglas Grove <dgrove@fhcrc.org>. Imagemap code from Barry Rowlingson <B.Rowlingson@lancaster.ac.uk>. HaarSeg code from Erez Ben-Yaacov; downloaded from <http://www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm>

License: GPL (>= 3)

Uses: cgh, cluster, GDD, Hmisc, papply, waveslim, Rmpi, rsprng

Released over 9 years ago.


3 previous versions

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