AlphaSimR (0.11.0)

0 users

Breeding Program Simulations.

https://alphagenes.roslin.ed.ac.uk/wp/software-2/alphasimr/
https://bitbucket.org/hickeyjohnteam/alphasimr
http://cran.r-project.org/web/packages/AlphaSimR

The successor to the 'AlphaSim' software for breeding program simulation [Faux et al. (2016) ]. Used for stochastic simulations of breeding programs to the level of DNA sequence for every individual. Contained is a wide range of functions for modeling common tasks in a breeding program, such as selection and crossing. These functions allow for constructing simulations of highly complex plant and animal breeding programs via scripting in the R software environment. Such simulations can be used to evaluate overall breeding program performance and conduct research into breeding program design, such as implementation of genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS') for fast simulation of biallelic sequences according to a population demographic history [Chen et al. (2009) ].

Maintainer: Chris Gaynor
Author(s): Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>), Gregor Gorjanc [ctb] (<https://orcid.org/0000-0001-8008-2787>), David Wilson [ctb], Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>), John Hickey [ctb] (<https://orcid.org/0000-0001-5675-3974>)

License: MIT + file LICENSE

Uses: R6, Rcpp, testthat, knitr, rmarkdown

Released about 1 month ago.


4 previous versions

Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of AlphaSimR yet. Want to be the first? Write one now.


Related packages:(20 best matches, based on common tags.)


Search for AlphaSimR on google, google scholar, r-help, r-devel.

Visit AlphaSimR on R Graphical Manual.