AutoPipe (0.1.6)

0 users

Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis.

http://cran.r-project.org/web/packages/AutoPipe

An unsupervised fully-automated pipeline for transcriptome analysis or a supervised option to identify characteristic genes from predefined subclasses. We rely on the 'pamr' clustering algorithm to cluster the Data and then draw a heatmap of the clusters with the most significant genes and the least significant genes according to the 'pamr' algorithm. This way we get easy to grasp heatmaps that show us for each cluster which are the clusters most defining genes.

Maintainer: Karam Daka
Author(s): Karam Daka [cre, aut], Dieter Henrik Heiland [aut]

License: GPL-3

Uses: cluster, msigdbr, pamr, RColorBrewer, Rtsne

Released about 1 month ago.


Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of AutoPipe yet. Want to be the first? Write one now.


Related packages:(20 best matches, based on common tags.)


Search for AutoPipe on google, google scholar, r-help, r-devel.

Visit AutoPipe on R Graphical Manual.