BAMMtools (2.1.6)
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees.
http://www.bamm-project.org
http://cran.r-project.org/web/packages/BAMMtools
Provides functions for analyzing and visualizing complex macroevolutionary dynamics on phylogenetic trees. It is a companion package to the command line program BAMM (Bayesian Analysis of Macroevolutionary Mixtures) and is entirely oriented towards the analysis, interpretation, and visualization of evolutionary rates. Functionality includes visualization of rate shifts on phylogenies, estimating evolutionary rates through time, comparing posterior distributions of evolutionary rates across clades, comparing diversification models using Bayes factors, and more.
Maintainer:
Pascal Title
Author(s): Dan Rabosky, Mike Grundler, Pascal Title, Carlos Anderson, Jeff Shi, Joseph Brown, Huateng Huang, Jon Mitchell
License: GPL (>= 2)
Uses: ape, gplots, Rcpp
Reverse suggests: binst
Released over 2 years ago.
9 previous versions
- BAMMtools_2.1.5. Released almost 3 years ago.
- BAMMtools_2.1.4. Released about 3 years ago.
- BAMMtools_2.1.3. Released about 3 years ago.
- BAMMtools_2.1.1. Released over 3 years ago.
- BAMMtools_2.1.0. Released over 3 years ago.
- BAMMtools_2.0.6. Released almost 4 years ago.
- BAMMtools_2.0.5. Released over 4 years ago.
- BAMMtools_2.0.4. Released over 4 years ago.
- BAMMtools_2.0.2. Released about 5 years ago.
Ratings
Overall: |
|
Documentation: |
|
Log in to vote.
Reviews
No one has written a review of BAMMtools yet. Want to be the first? Write one now.
Related packages: PHYLOGR, apTreeshape, geiger, ggplot2, ouch, paleoTS, rmetasim, vegan, ape, phangorn, picante, MCMCglmm, metafor, pegas, phylobase, adephylo, phyloclim, BoSSA, phyclust, TreeSim … (20 best matches, based on common tags.)
Search for BAMMtools on google, google scholar, r-help, r-devel.
Visit BAMMtools on R Graphical Manual.
