BCellMA (0.3.2)

B Cell Receptor Somatic Hyper Mutation Analysis.


Includes a set of functions to analyze for instance nucleotide frequencies as well as transition and transversion. Can reconstruct germline sequences based on the international ImMunoGeneTics information system (IMGT/HighV-QUEST) outputs, calculate and plot the difference (%) of nucleotides at 6 positions around a mutation to identify and characterize hotspot motifs as well as calculate and plot average mutation frequencies of nucleotide mutations resulting in amino acid substitution.

Maintainer: Olena Ohlei
Author(s): Olena Ohlei <olena.ohlei@student.uni-luebeck.de>

License: GPL (>= 2)

Uses: ggplot2, reshape2, knitr, rmarkdown

Released over 2 years ago.