BIGDAWG (1.16)

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Case-Control Analysis of Multi-Allelic Loci.

http://tools.immunogenomics.org/
https://github.com/IgDAWG/BIGDAWG
http://cran.r-project.org/web/packages/BIGDAWG

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) . Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) .

Maintainer: Steve Mack
Author(s): Derek Pappas <dpappas@chori.org>, Steve Mack <sjmack@chori.org>, Jill Hollenbach <Jill.Hollenbach@ucsf.edu>

License: GPL (>= 3)

Uses: haplo.stats, knitr, rmarkdown, XML

Released 20 days ago.


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