BacArena (1.5.0)

Modeling Framework for Cellular Communities in their Environments.

https://github.com/euba/BacArena
http://cran.r-project.org/web/packages/BacArena

Can be used for simulation of organisms living in communities. Each organism is represented individually and genome scale metabolic models determine the uptake and release of compounds. Biological processes such as movement, diffusion, chemotaxis and kinetics are available along with data analysis techniques.

Maintainer: Johannes Zimmermann
Author(s): Eugen Bauer [aut], Johannes Zimmermann [aut, cre]

License: GPL-3

Uses: deSolve, ggplot2, glpkAPI, igraph, Matrix, Rcpp, ReacTran, reshape2, sybil, knitr, sybilSBML, rmarkdown

Released over 3 years ago.