BiGGR (1.8)

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Creates an interface to BiGG database, provides a framework for simulation and produces flux graphs.

http://www.r-project.org
http://www.bioinformatics.nl
http://cran.r-project.org/web/packages/BiGGR

This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/). The package aids in performing flux balance analysis (FBA) on the similar lines of the COBRA toolbox(http://systemsbiology.ucsd.edu/Downloads/Cobra_Toolbox) but with the added value of visualizing the results in the form of a metabolic network using the graphviz framework.

Maintainer: Anand K. Gavai
Author(s): Anand K. Gavai

License: GPL (>= 2)

Uses: diagram, graph, igraph, LIM, limSolve, minet, rsbml

Released over 4 years ago.


1 previous version

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  3.0/5 (2 votes)

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