CpGFilter (1.1)

CpG Filtering Method Based on Intra-Class Correlation Coefficients.


Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.

Maintainer: Jun Chen
Author(s): Jun Chen <Chen.Jun2@mayo.edu>

License: GPL-3

Uses: matrixStats

Released over 2 years ago.