DOSim (2.2)

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Disease Analysis toolkit for gene set; Computation of similarities between DO terms and disease similarity between gene products; Module detection among the gene set and multilayer annotation for each module..

http://bioinfo.hrbmu.edu.cn/dosim/
http://cran.r-project.org/web/packages/DOSim

This package implements multiple similarity measures for DO terms and gene products. It is aiming at disease analyis for gene sets. Modules of a gene set could be detected and further multilayer annoated on DO, GO and KEGG. We also provides users to conduct DO enrichment analysis and basic information fetching for DO.DOSim: An R package for similarity between diseases based on Disease Ontology(http://www.biomedcentral.com/1471-2105/12/266)

Maintainer: Jiang Li
Author(s): Jiang Li <riverlee2008@gmail.com>

License: GPL (>= 2)

Uses: dynamicTreeCut, GOSim, graph, moduleColor, RBGL

Released almost 8 years ago.


5 previous versions

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