EpiEstim (2.2-1)

Estimate Time Varying Reproduction Numbers from Epidemic Curves.


Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) and Wallinga and Teunis (2004) .

Maintainer: Anne Cori
Author(s): Anne Cori [aut, cre] (<https://orcid.org/0000-0002-8443-9162>), Simon Cauchemez [ctb], Neil M. Ferguson [ctb] (<https://orcid.org/0000-0002-1154-8093>), Christophe Fraser [ctb] (<https://orcid.org/0000-0003-2399-9657>), Elisabeth Dahlqwist [ctb] (<https://orcid.org/0000-0001-5797-6803>), P. Alex Demarsh [ctb], Thibaut Jombart [ctb] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>), Justin Lessler [ctb] (<https://orcid.org/0000-0002-9741-8109>), Shikun Li [ctb], Jonathan A. Polonsky [ctb] (<https://orcid.org/0000-0002-8634-4255>), Jake Stockwin [ctb], Robin Thompson [ctb] (<https://orcid.org/0000-0001-8545-5212>), Rolina van Gaalen [ctb]

License: GPL (>= 2)

Uses: coarseDataTools, coda, fitdistrplus, ggplot2, gridExtra, incidence, reshape2, scales, testthat, knitr, rmarkdown, covr, vdiffr
Reverse suggests: epibase, outbreaker, OutbreakTools

Released 5 months ago.