GeneNT (1.4)

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Relevance or Dependency network and signaling pathway discovery.

http://www-personal.umich.edu/~zhud/genent.htm
http://cran.r-project.org/web/packages/GeneNT

The package implements a two-stage algorithm to screen co-expressed gene pairs with controlled False Discovery Rate (FDR) and Minimum Acceptable Strength (MAS). The packages also constructs relevance networks and clusters co-expressed genes (both similarly co-expressed and transitively co-expressed). In addtion, it includes new correlation estimators and non-parametric statistical inference procedure for replicated gene microarray data.

Maintainer: Dongxiao Zhu
Author(s): Dongxiao Zhu (http://www-personal.umich.edu/~zhud/genent.htm)

License: GPL version 2 or newer

Uses: e1071, graph, RBGL

Released almost 2019 years ago.


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