HACSim (1.0.5)

Iterative Extrapolation of Species' Haplotype Accumulation Curves for Genetic Diversity Assessment.

http://cran.r-project.org/web/packages/HACSim

Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) , Phillips et al. (2019) and Phillips et al. (2020) . Any genomic marker can be targeted to assess likely required specimen sample sizes. The method is well-suited to assess sampling sufficiency for DNA barcoding initiatives.

Maintainer: Jarrett D. Phillips
Author(s): Jarrett D. Phillips [aut, cre], Steven H. French [ctb]

License: GPL-3

Uses: ape, pegas, Rcpp

Released 5 months ago.