HMP (1.0)

Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP.

http://cran.r-project.org/web/packages/HMP

This package provides several functions to perform formal hypothesis testing, and power and sample size calculations for human microbiome experiments. Dirichlet-Multinomial distribution is proposed for modeling the species abundance distributions of human microbiota (ranked bacterial taxa counts).

Maintainer: Berkley Shands
Author(s): Patricio S. La Rosa, Elena Deych, Berkley Shands, William D. Shannon

License: GPL-2

Uses: binomSamSize, dirmult, Hmisc, lattice, maxLik, MCMCpack, vegan, zipfR
Reverse suggests: HMPTrees

Released about 8 years ago.