Hapi (0.0.3)

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Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells.


Inference of chromosome-length haplotypes using a few haploid gametes of an individual. The gamete genotype data may be generated from various platforms including genotyping arrays and sequencing even with low-coverage. Hapi simply takes genotype data of known hetSNPs in single gamete cells as input and report the high-resolution haplotypes as well as confidence of each phased hetSNPs. The package also includes a module allowing downstream analyses and visualization of identified crossovers in the gametes.

Maintainer: Ruidong Li
Author(s): Ruidong Li, Han Qu, Jinfeng Chen, Shibo Wang, Le Zhang, Julong Wei, Sergio Pietro Ferrante, Mikeal L. Roose, Zhenyu Jia

License: GPL-3

Uses: ggplot2, HMM, testthat, knitr

Released over 1 year ago.



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