HyPhy (1.0)

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Macroevolutionary phylogentic analysis of species trees and gene trees.

http://cran.r-project.org/web/packages/HyPhy

A Bay Area high level phylogenetic analysis package mostly using the birth-death process. Analysis of species tree branching times and simulation of species trees under a number of different time variable birth-death processes. Analysis of gene tree species tree reconciliations and simulations of gene trees in species trees.

Maintainer: Nathaniel Malachi Hallinan
Author(s): Nathaniel Malachi Hallinan

License: GPL-2

Uses: ape, R.utils

Released about 5 years ago.


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Related packages: PHYLOGR, apTreeshape, geiger, ggplot2, ouch, paleoTS, rmetasim, vegan, ape, phangorn, MCMCglmm, metafor, pegas, phylobase, adephylo, phyloclim, BoSSA, phyclust, TreeSim, TreePar(20 best matches, based on common tags.)


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