LDheatmap (0.99-2)

2 users

Graphical Display of Pairwise Linkage Disequilibria Between SNPs.

http://stat.sfu.ca/statgen/research/ldheatmap.html
http://cran.r-project.org/web/packages/LDheatmap

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

Maintainer: Brad McNeney
Author(s): Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney <mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>

License: GPL-3

Uses: genetics, ggplot2, lattice
Reverse depends: gaston, synbreed

Released 12 months ago.


8 previous versions

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Related packages: Biodem, GenABEL, HardyWeinberg, SNPmaxsel, adegenet, bqtl, gap, genetics, hapassoc, haplo.ccs, haplo.stats, hierfstat, hwde, ibdreg, luca, ouch, pbatR, qtl, rmetasim, seqinr(20 best matches, based on common tags.)


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Visit LDheatmap on R Graphical Manual.