LDheatmap (0.99-7)

2 users

Graphical Display of Pairwise Linkage Disequilibria Between SNPs.


Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages .

Maintainer: Brad McNeney
Author(s): Ji-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Youwei Yan [ctb], Jinko Graham [aut]

License: GPL-3

Uses: genetics, Rcpp, ggplot2, lattice, vcfR
Reverse depends: gaston, synbreed

Released 5 months ago.

11 previous versions



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Related packages: Biodem, HardyWeinberg, SNPmaxsel, adegenet, bqtl, gap, genetics, hapassoc, haplo.stats, hierfstat, hwde, ibdreg, ouch, pbatR, qtl, rmetasim, seqinr, snp.plotter, stepwise, tdthap(20 best matches, based on common tags.)

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Visit LDheatmap on R Graphical Manual.