LDheatmap (0.99-4)

2 users

Graphical Display of Pairwise Linkage Disequilibria Between SNPs.


Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

Maintainer: Brad McNeney
Author(s): Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney <mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>

License: GPL-3

Uses: genetics, ggplot2, lattice
Reverse depends: gaston, synbreed

Released 10 days ago.

9 previous versions



  4.0/5 (1 vote)


  0.0/5 (0 votes)

Log in to vote.


No one has written a review of LDheatmap yet. Want to be the first? Write one now.

Related packages: Biodem, GenABEL, HardyWeinberg, SNPmaxsel, adegenet, bqtl, gap, genetics, hapassoc, haplo.ccs, haplo.stats, hierfstat, hwde, ibdreg, luca, ouch, pbatR, qtl, rmetasim, seqinr(20 best matches, based on common tags.)

Search for LDheatmap on google, google scholar, r-help, r-devel.

Visit LDheatmap on R Graphical Manual.