MSIseq (1.0.0)

Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations.

A decision tree classifier for detecting microsatellite instability (MSI) in somatic mutation data from whole exome sequencing. MSI is detected based on different mutation rates in all sites as well as in simple sequence repeats. This mechanism can also be applied to sequence data of targeted gene panels with shorter sequence length.

Maintainer: Mini Huang
Author(s): Mini Huang

License: GPL (>= 2)

Uses: R.utils, rJava, RWeka

Released almost 5 years ago.