PTXQC (1.0.0)

Quality Report Generation for MaxQuant and mzTab Results.

https://github.com/cbielow/PTXQC
http://cran.r-project.org/web/packages/PTXQC

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) .

Maintainer: Chris Bielow
Author(s): Chris Bielow <chris.bielow@bsc.fu-berlin.de>

License: GPL-2

Uses: data.table, ggdendro, ggplot2, gtable, kableExtra, knitr, plyr, RColorBrewer, reshape2, rmarkdown, seqinr, UpSetR, yaml, testthat

Released 15 days ago.