Quartet (1.0.0)

Comparison of Phylogenetic Trees Using Quartet and Bipartition Measures.


Calculates the number of four-taxon subtrees consistent with a pair of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986), Reconstructing the shape of a tree from observed dissimilarity data, Advances in Applied Mathematics, 7, 309-343 , and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for computing the quartet and triplet distances between binary or general trees, Bioinformatics, 30, 20792080 for pairs of bifurcating trees.

Maintainer: Martin R. Smith
Author(s): Martin R. Smith [aut, cre, cph] (<https://orcid.org/0000-0001-5660-1727>), Andreas Sand [ant], Gerth Stlting Brodal [ant], Rolf Fagerberg [ant], Thomas Mailund [ant], Christian N. S. Pedersen [ant], Jens Johansen [ant], Morten K. Holt [ant]

License: GPL (>= 2)

Uses: ape, memoise, phangorn, Rcpp, Rdpack, Ternary, TreeSearch, testthat, knitr, rmarkdown, bookdown, usethis
Reverse suggests: CongreveLamsdell2016

Released 4 months ago.