RLMM (1.14.0)

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A Genotype Calling Algorithm for Affymetrix SNP Arrays.

http://www.stat.berkeley.edu/users/nrabbee/RLMM
http://cran.r-project.org/web/packages/RLMM

A classification algorithm, based on a multi-chip, multi-SNP approach for Affymetrix SNP arrays. Using a large training sample where the genotype labels are known, this aglorithm will obtain more accurate classification results on new data. RLMM is based on a robust, linear model and uses the Mahalanobis distance for classification. The chip-to-chip non-biological variation is removed through normalization. This model-based algorithm captures the similarities across genotype groups and probes, as well as thousands other SNPs for accurate classification. NOTE: 100K-Xba only at for now.

Maintainer: Nusrat Rabbee
Author(s): Nusrat Rabbee <nrabbee@post.harvard.edu>, Gary Wong <wongg62@berkeley.edu>

License: LGPL (>= 2)

Uses: MASS

Released about 8 years ago.


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