Rsampletrees (0.1)

Sampletrees Input/Output Processing.

http://cran.r-project.org/web/packages/Rsampletrees

Contains functions that are useful for pre- and post-processing the tree output from the MCMC-based C++ program sampletrees. The program sampletrees is used to sample gene genealogies conditional on either phased or unphased SNP genotype data. More information about sampletrees can be found at http://stat.sfu.ca/statgen/research/sampletrees.html . Pre-processing tasks involve creating the settings file, the haplotype estimation files (if input data is genotype), and error checking the settings. Post-processing involves reading in the MCMC output from a run of sampletrees and computing summary statistics.

Maintainer: Kelly Burkett
Author(s): Kelly Burkett, Brad McNeney, Jinko Graham

License: GPL-2

Uses: Does not use any package

Released almost 5 years ago.