SNPassoc (1.9-2)

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SNPs-based whole genome association studies.

http://www.creal.cat/jrgonzalez/software.htm
http://cran.r-project.org/web/packages/SNPassoc

This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.

Maintainer: Juan R Gonzalez
Author(s): Juan R González, Lluís Armengol, Elisabet Guinó, Xavier Solé, and Víctor Moreno

License: GPL (>= 2)

Uses: haplo.stats, mvtnorm, survival
Reverse depends: compareGroups

Released almost 5 years ago.


8 previous versions

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Related packages: Amelia, CVThresh, HardyWeinberg, Hmisc, ade4, cat, eigenmodel, experiment, ltm, memisc, mice, mitools, mix, norm, pan, randomForest, sbgcop, yaImpute, zoo, PSM(20 best matches, based on common tags.)


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