SeqKat (0.0.6)

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Detection of Kataegis.

http://cran.r-project.org/web/packages/SeqKat

Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 .

Maintainer: Paul C. Boutros
Author(s): Fouad Yousif, Xihui Lin, Fan Fan, Christopher Lalansingh

License: GPL-2

Uses: doParallel, foreach, doMC, testthat, knitr, rmarkdown

Released about 1 month ago.


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