SimBIID (0.1.4)

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Simulation-Based Inference Methods for Infectious Disease Models.

Provides some code to run simulations of state-space models, and then use these in the Approximate Bayesian Computation Sequential Monte Carlo (ABC-SMC) algorithm of Toni et al. (2009) and a bootstrap particle filter based particle Markov chain Monte Carlo (PMCMC) algorithm (Andrieu et al., 2010 ). Also provides functions to plot and summarise the outputs.

Maintainer: Trevelyan J. McKinley
Author(s): Trevelyan J. McKinley [aut, cre], Stefan Widgren [aut] (Author of 'R/mparse.R'), Pavol Bauer [cph] (R/mparse.R), Robin Eriksson [cph] (R/mparse.R), Stefan Engblom [cph] (R/mparse.R)

License: GPL (>= 3)

Uses: coda, dplyr, ggplot2, mvtnorm, purrr, RColorBrewer, Rcpp, RcppXPtrUtils, tibble, tidyr, GGally, testthat

Released about 1 month ago.

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