SimHap (1.2.0)

A comprehensive modeling framework for epidemiological outcomes and a simulation-based approach to haplotypic analysis of population-based data.

http://cran.r-project.org/web/packages/SimHap

SimHap is a package for genetic association testing. It can perform single SNP and multi-locus (haplotype) association analyses for continuous Normal, binary, longitudinal and right-censored outcomes measured in population-based samples. SimHap uses estimation maximisation techniques for inferring haplotypic phase in individuals, and incorporates a novel simulation-based approach to deal with the uncertainty of imputed haplotypes in association testing.

Maintainer: Matthew Kowgier
Author(s): Pamela A. McCaskie

License: GPL-2

Uses: nlme, survival

Released over 7 years ago.