SimInf (5.1.0)

A Framework for Data-Driven Stochastic Disease Spread Simulations.

https://github.com/stewid/SimInf
http://cran.r-project.org/web/packages/SimInf

Livestock movements are important for the spread of many infectious diseases between herds. The package provides an efficient and flexible framework for stochastic disease spread modelling that integrates within-herd disease dynamics as continuous-time Markov chains and livestock movements between herds as scheduled events. The core simulation solver is implemented in C and uses 'OpenMP' (if available) to divide work over multiple processors. The package contains template models and can be extended with user defined models.

Maintainer: Stefan Widgren
Author(s): Stefan Widgren (National Veterinary Institute, Sweden and Uppsala University, Sweden), Pavol Bauer (Uppsala University, Sweden), Stefan Engblom (Uppsala University, Sweden)

License: GPL-3

Uses: Matrix

Released about 2 years ago.