TreeSearch (0.3.0)
Phylogenetic Tree Search Using Custom Optimality Criteria.
https://github.com/ms609/TreeSearch
http://cran.r-project.org/web/packages/TreeSearch
Searches for phylogenetic trees that are optimal using a user-defined criterion. Implements Profile Parsimony (Faith and Trueman, 2001) , and Successive Approximations (Farris, 1969) . Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith (2019) .
Maintainer:
Martin R. Smith
Author(s): Martin R. Smith [aut, cre, cph] (<https://orcid.org/0000-0001-5660-1727>), Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>), Klaus Schliep [cph] (<https://orcid.org/0000-0003-2941-0161>), Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
License: GPL (>= 3)
Uses: ape, clue, colorspace, memoise, phangorn, R.cache, Rdpack, Rcpp, testthat, xlsx, knitr, shiny, rmarkdown
Reverse suggests: CongreveLamsdell2016
Released 2 months ago.
7 previous versions
- TreeSearch_0.2.2. Released 5 months ago.
- TreeSearch_0.2.1. Released 6 months ago.
- TreeSearch_0.2.0. Released 8 months ago.
- TreeSearch_0.1.2. Released about 1 year ago.
- TreeSearch_0.1.0. Released about 1 year ago.
- TreeSearch_0.0.8. Released about 1 year ago.
- TreeSearch_0.0.6. Released over 1 year ago.
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