TreeSearch (0.2.0)

Phylogenetic Tree Search Using Custom Optimality Criteria.

Searches for phylogenetic trees that are optimal using a user-defined criterion. Implements Profile Parsimony (Faith and Trueman, 2001) , and Successive Approximations (Farris, 1969) . Handles inapplicable data using the algorithm of Brazeau Guillerme and Smith (2017) .

Maintainer: Martin R. Smith
Author(s): Martin R. Smith [aut, cre, cph] (<>), Emmanuel Paradis [cph], Martin Brazeau [cph]

License: GPL (>= 3)

Uses: ape, colorspace, gmp, memoise, phangorn, R.cache, Rdpack, testthat, xlsx, knitr, shiny, rmarkdown
Reverse suggests: CongreveLamsdell2016

Released about 1 year ago.