TreeSearch (0.2.2)

Phylogenetic Tree Search Using Custom Optimality Criteria.

Searches for phylogenetic trees that are optimal using a user-defined criterion. Implements Profile Parsimony (Faith and Trueman, 2001) , and Successive Approximations (Farris, 1969) . Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith (2019) .

Maintainer: Martin R. Smith
Author(s): Martin R. Smith [aut, cre, cph] (<>), Emmanuel Paradis [cph] (<>), Klaus Schliep [cph] (<>), Martin Brazeau [cph] (<>)

License: GPL (>= 3)

Uses: ape, colorspace, gmp, memoise, phangorn, R.cache, Rdpack, Rcpp, testthat, xlsx, knitr, shiny, rmarkdown
Reverse suggests: CongreveLamsdell2016

Released 11 months ago.