WhopGenome (0.9.7)

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High-Speed Processing of VCF, FASTA and Alignment Data.

http://cran.r-project.org/web/packages/WhopGenome

Provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.

Maintainer: Ulrich Wittelsbuerger
Author(s): Ulrich Wittelsbuerger [aut, cre], Heng Li [ctb], Bob Handsaker [ctb]

License: GPL (>= 2)

Uses: DBI, RMySQL
Reverse depends: gaston
Reverse suggests: PopGenome

Released about 2 years ago.


4 previous versions

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