aPCoA (1.0)

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Covariate Adjusted PCoA Plot.


In fields such as ecology, microbiology, and genomics, non-Euclidean distances are widely applied to describe pairwise dissimilarity between samples. Given these pairwise distances, principal coordinates analysis (PCoA) is commonly used to construct a visualization of the data. However, confounding covariates can make patterns related to the scientific question of interest difficult to observe. We provide 'aPCoA' as an easy-to-use tool to improve data visualization in this context, enabling enhanced presentation of the effects of interest. Details are described in Yushu Shi, Liangliang Zhang, Kim-Anh Do, Christine Peterson and Robert Jenq (2020) .

Maintainer: Yushu Shi
Author(s): Yushu Shi

License: GPL (>= 2)

Uses: ape, car, cluster, mvabund, randomcoloR, vegan

Released 9 days ago.



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