alakazam (0.3.0)

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Immunoglobulin Clonal Lineage and Diversity Analysis.

http://alakazam.readthedocs.org
http://cran.r-project.org/web/packages/alakazam

Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) , Stern, Yaari and Vander Heiden, et al (2014) .

Maintainer: Jason Vander Heiden
Author(s): Jason Vander Heiden [aut, cre], Namita Gupta [aut], Susanna Marquez [ctb], Daniel Gadala-Maria [ctb], Ruoyi Jiang [ctb], Nima Nouri [ctb], Kenneth Hoehn [ctb], Julian Zhou [ctb], Steven Kleinstein [aut, cph]

License: CC BY-SA 4.0

Uses: ape, dplyr, ggplot2, igraph, lazyeval, Matrix, progress, Rcpp, readr, rlang, scales, seqinr, stringi, tibble, tidyr, testthat, knitr, rmarkdown
Reverse depends: shazam, tigger

Released about 1 month ago.


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