apTreeshape (1.4-5)

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Analyses of Phylogenetic Treeshape.


apTreeshape is mainly dedicated to simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily.

Maintainer: ORPHANED
Author(s): Nicolas Bortolussi, Eric Durand, Michael Blum <michael.blum@imag.fr>, Olivier Francois <olivier.francois@imag.fr>

License: GPL (>= 2)

Uses: ape, quantreg
Reverse depends: iteRates
Reverse suggests: laser

Released almost 5 years ago.

4 previous versions



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Related packages: ape, geiger, ouch, pegas, phangorn, PHYLOGR, phylobase, paleoTS, phytools, adhoc, BAMMtools, PhySim, laser, picante, ade4, maticce, paleoTSalt, adephylo, MCMCglmm, phyclust(20 best matches, based on common tags.)

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