bisect (0.9.0)

0 users

Estimating Cell Type Composition from Methylation Sequencing Data.

https://github.com/EyalFisher/BiSect
http://cran.r-project.org/web/packages/bisect

An implementation of Bisect, a method for inferring cell type composition of samples based on methylation sequencing data (Whole Genome Bisulfite Sequencing and Reduced Representation Sequencing). The method is specifically tailored for sequencing data, and therefore works better than methods developed for methylation arrays. It contains a supervised mode that requires a reference (the methylation probabilities in the pure cell types), and a semi-supervised mode, that requires cell counts for a subset of the samples, but does not require a reference.

Maintainer: Eyal Fisher
Author(s): Eyal Fisher [aut, cre]

License: GPL-3

Uses: ggplot2, knitr, sirt, dplyr, tidyr, rmarkdown

Released 9 months ago.


Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of bisect yet. Want to be the first? Write one now.


Related packages:(20 best matches, based on common tags.)


Search for bisect on google, google scholar, r-help, r-devel.

Visit bisect on R Graphical Manual.